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napari-prism
API
Images:
im
napari_prism.im.mask_tma
napari_prism.im.dearray_tma
napari_prism.im.segment_tma
napari_prism.im.measure_tma
Preprocessing:
pp
napari_prism.pp.set_backend
napari_prism.pp.filter_by_obs_count
napari_prism.pp.filter_by_obs_value
napari_prism.pp.filter_by_obs_quantile
napari_prism.pp.filter_by_var_value
napari_prism.pp.filter_by_var_quantile
napari_prism.pp.fill_na
napari_prism.pp.log1p
napari_prism.pp.arcsinh
napari_prism.pp.zscore
napari_prism.pp.scale
napari_prism.pp.percentile
napari_prism.pp.neighbors
napari_prism.pp.add_obs_as_var
napari_prism.pp.subset_adata_by_var
napari_prism.pp.subset_adata_by_obs_category
Tools:
tl
napari_prism.tl.set_backend
napari_prism.tl.pca
napari_prism.tl.umap
napari_prism.tl.tsne
napari_prism.tl.harmony
napari_prism.tl.cluster_embeddings
napari_prism.tl.cluster_scores
Graph:
gr
napari_prism.gr.proximity_density
napari_prism.gr.cellular_neighborhoods_sq
napari_prism.gr.cellular_neighborhood_enrichment
Plotting:
pl
napari_prism.pl.image
napari_prism.pl.mask_tma
napari_prism.pl.dearray_tma
napari_prism.pl.segment_tma
napari_prism.pl.preview_tma_segmentation
napari_prism.pl.cluster_scores
Plotting:
io
napari_prism.io.qptiff
napari_prism.io.ometiff
Datasets:
datasets
napari_prism.datasets.nsclc4301_truncated
Changelog
Contributing guide
References
Tutorials
Getting started
TMA Image Analysis
AnnData Analysis
.md
.pdf
API
API
#
Images:
im
Preprocessing:
pp
Tools:
tl
Graph:
gr
Plotting:
pl
Plotting:
io
Datasets:
datasets