Images: im

Provides functions to perform the core image operations including TMA masking, dearraying, and segmenting.

Functions

These functions provide convenient functions to expose the core functions of the TMA image processing classes.

im.mask_tma	Masks a channel or channels of the raw multiscale image stored in the .image attribute of the provided SpatialData object.
im.dearray_tma	Automatically dearrays a TMA on masks stored in the .labels attribute of the provided spatialdata object.
im.segment_tma	Performs cell segmentation using Cellpose to the given image.
im.measure_tma	Measures the properties of the labels or cells in the image from a given labels mask.