napari_prism.pp.neighbors

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napari_prism.pp.neighbors#

napari_prism.pp.neighbors(adata, copy=True, **kwargs)#

Compute a neighborhood graph in a given expression or embedding space. Wrapper for scanpy.pp.neighbors or rsc.pp.neighbors.

Parameters:

  • adata (AnnData) – Anndata object.

  • copy (bool (default: True)) – Return a copy of the modified AnnData object.

  • **kwargs – Additional keyword arguments to pass to pp.neighbors.

Return type:

AnnData | None

Returns:

AnnData object with neighbors computed. If copy is False, modifies the AnnData object in place and returns None.

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