napari_prism.tl.umap

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napari_prism.tl.umap#

napari_prism.tl.umap(adata, copy=True, **kwargs)#

Perform UMAP. Wraps sc.pl/tl.umap or rsc.tl.umap.

Parameters:

  • adata (AnnData) – Anndata object.

  • copy (bool (default: True)) – Return a copy instead of writing inplace.

  • kwargs – Additional keyword arguments to pass to tl.umap.

Return type:

AnnData

Returns:

Anndata object with UMAP results in .obsm. If copy is False, modifies the AnnData object in place and returns None.

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