Graph: gr

Provides functions to perform spatial analyses on squidpy-formatted .obsp spatial connectivity graphs.

Functions

gr.proximity_density	Computes proximity density from scimap's p-score function compatible with squidpy-generated .obsp spatial graphs.
gr.cellular_neighborhoods_sq	Compute Nolan's cellular neighborhoods compatible with squidpy-generated .obsp spatial graphs.
gr.cellular_neighborhood_enrichment	Perform a cellular neighborhood enrichment test using OLS linear models.